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Sabot de Frotey (National Nature Reserve) (Franche Comté)
Sächsische Schweiz (NP) (Germany)

Šafářka (PP) (South-Moravian region)
Šafránová stráň (PP) (Hradec Kralove region)
Saint Denis-du-Payré (National Nature Reserve) (Pays de Loire)
Saint Quentin-en Yvelines (National Nature Reserve) (Ile de France)
Salabka (PP) (Prague)

Saladínská olšina (PR) (South Bohemian region)
Salajka (NPR) (Moravian-Silesian region)

Salatín (NPR) (Zilina region)
Salesiova výšina (PP) (Usti nad Labem region)

Šalgočiansky park (CHA) (Trnava region)
Salka (PP) (Pilsen region)
Sallandse Heuvelrug (NP) (Netherlands)
Saltfjellet–Svartisen (NP) (Norway)

Salvátorské lúky (PR) (Presov region)
Šance (PR) (Prague)
Sånfjället (NP) (Sweden)
Sangsurière et Adriennérie (National Nature Reserve) (Lower Normandy)
Santon (PP) (South-Moravian region)

Santovský park (Nitra region)
Šardice, terasový vinohrad (South-Moravian region)

Sarek (NP) (Sweden)
Šarišský hradný vrch (NPR) (Presov region)
Šarkanica (NPR) (Banska Bystrica region)
Šašnatá (PP) (Trencany region)
Sassen – Bünsow Land (NP) (Norway)
Schiermonnikoog (NP) (Netherlands)
Schweinfels (Regional Nature Reserve) (Alsace)
Šebeň (PP) (Jihlava region)
Sedlec (PR) (Usti nad Labem region)
Sedlec u Mikulova (South-Moravian region)

Sedlecká rokle (PP) (Pilsen region)
Sedlecké skály (PP) (Prague)
Sedlická obora (PR) (South Bohemian region)
Sedlina (PP) (South Bohemian region)

Sedliská (PR) (Trnava region)
Sedlnické sněženky (PP) (Moravian-Silesian region)
Sedlo (NPR) (Usti nad Labem region)
Sedloňovský vrch (PR) (Hradec Kralove region)
Seigne des Barbouillons (Regional Nature Reserve) (Franche Comté)
Seiland (NP) (Norway)
Šejval (NPP) (Pardubice region)
Selecké kamenné more (PP) (Trencany region)
Selecký potok (PP) (Trencany region)
Seleštianska stráň (PR) (Banska Bystrica region)
Selský les (PR) (Pardubice region)

Selský potok (PP) (Pardubice region)

Semínský přesyp (NPP) (Pardubice region)
Senianske rybníky (NPR) (Kosice region)
 
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